LTERN Data Portal
Victorian Alpine Plot Network (Burramys Population Surveys): Burramys Trapping Data, South-east Highlands, Australia, 1982+
- Citation
-
Morgan, J; La Trobe University (): Victorian Alpine Plot Network (Burramys Population Surveys): Burramys Trapping Data, South-east Highlands, Australia, 1982+. Long Term Ecological Research Network. http://www.ltern.org.au/knb/metacat/ltern.327.23/html
- Identifier
-
- docid
- ltern.327.23
- Data Creators
-
- Individual
- Dr. John Morgan
- Organization
- La Trobe University
- Organization
- La Trobe University
- Abstract
-
This package represents all data from Burramys trapping surveys within the Alpine Long Term Monitoring - Burramys Population Surveys project. The surveys began in 1982, and the most recent addition is from 2017. This data package contains data collected at a sub-set of the 481 long term monitoring plots which have been established in Australian Alps and in Tasmania. The sampling regime within the Victorian Network generally consists of multiple randomly positioned transects within sites, (rather than ‘plots’ sensu stricto), with each site, and/or transect geo-located. Point quadrats are taken at fixed intervals along each transect. The number of transects within sites, and sampling frequency varies from annual to decadal, depending on site and purpose. This general array of sampling transects, point quadrats along transects and floristic quadrats is consistent between grassland and snowpatch monitoring sites, although the number of transects and floristic quadrats needed to detect change in key variables (vegetation cover, bare ground, etc) at each site varies over time. There are also long-term monitoring sites in wetlands. The Victorian Alpine Plot Network research plots are revisited on a 2-10 years basis. A synopsis of related data packages which have been collected as part of the Victorian Alpine Plot Network’s full program is provided at http://www.ltern.org.au/index.php/ltern-plot-networks/victorian-alpine
- Contacts for Questions on the Use and Interpretation of Data
-
- Individual
- Dr Warwick Papst
- Position
- Plot network contact
- Organization
- La Trobe University
- Address
-
Research Centre for Applied Alpine Ecology
Department of Agricultural Sciences, La Trobe University
Melbourne. Victoria 3086
- Phone
-
- voice
- 03 9479 1230
- Email Address
- w.papst@latrobe.edu.au
- Individual
- Dr Henrik Wahren
- Position
- Plot network contacts
- Organization
- La Trobe University
- Address
-
Research Centre for Applied Alpine Ecology
Department of Agricultural Sciences, La Trobe University,
Melbourne. Victoria 3 3086
- Phone
-
- voice
- 03 9479 2178
- Email Address
- c.wahren@latrobe.edu.au
- Individual
- Dr. John Morgan
- Organization
- La Trobe University
- Address
-
Department of Ecology, Evolution and Environment
La Trobe University
Bundoora. Vic 3086
Australia
- Phone
-
- voice
- 03 9479 2226
- Email Address
- J.Morgan@latrobe.edu.au
- Project Information and Data Owners
-
- Title
- Victorian Alpine Plot Network
- Personnel
-
- Role
- Data Owner
- Organization
- La Trobe University
- Role
- Plot Network Leader
- Individual
- Dr. John Morgan
- Organization
- La Trobe University
- Role
- Plot network contact
- Individual
- Dr Warwick Papst
- Position
- Plot network contact
- Organization
- La Trobe University
- Role
- Plot network contact
- Individual
- Dr Henrik Wahren
- Position
- Plot network contacts
- Organization
- La Trobe University
- Role
- Plot network contact
- Individual
- Dr Richard Williams
- Position
- Senior Research Scientist, CSIRO
- Organization
- ex-CSIRO
- Funding
-
Since 2012 this project has been part of the Long Term Ecological Research Network (LTERN). This work was supported by the Australian Government’s Terrestrial Ecosystems Research Network (www.tern.org.au) – an Australian research infrastructure facility established under the National Collaborative Research Infrastructure Strategy and Education Infrastructure Fund–Super Science Initiative through the Department of Industry, Innovation, Science, Research and Tertiary Education. Also funded by La Trobe University
- Methods and Sampling Information
-
- Methods
-
Method Step 1
- Description
-
Plot set-up
Systematic surveys for Burramys parvus commenced in Victoria in 1982, and the network of trapping sites has expanded since then. The standard trapping grid (0.25 ha), as described by Mansergh(1984) has been used throughout: 3 x 100 m lines 12.5 m apart with Elliot traps placed 5 m apart (= 60 traps) x 3 days = 180 trap-nights per standard visit. This standard site could be expanded spatially (more lines) or temporally (up to 5 days). More than 90 trapping sites have been established across the Victorian Alps and most have been visited more than once.
There have been three main locations where sites have been established:
Mt Hotham surrounds: Mt Higginbotham (4 sites, annually since 1982, >15 sites with > 3 visits); Mt Loch (3 sites visited 7 times since 1983); Mt Little Higginbotham (3 sites visited 6 times since 2004).
Bogong High Plains and surrounds: (Mt McKay annually/ bi-annually since 1995); Timms Spur (7 surveys since 1992), Bundarra scree (> 2 sites with 10 visits since 1984); Pretty Valley and Falls Creek surrounds (> 10 sites with at least 3 visits; see Heinze et al. (2004)).
Mt Buller: (4 sites visited annually since 1996; 7 sites with at least 3 visits), sampling times include both breeding and non-breeding seasons.
There are other so-called ‘non-successful areas’ (e.g. Mt Wombargo, Cobberras, Mt Stirling) where surveys have failed to detect populations of Burramys.
This package primarily contains data from West Higginbotham site 100 at Mt Hotham as it is the most rigorously sampled and longest term annually monitored Mountain Pygmy-possum (MPP) site. As such many of the data variables only have one entry relating to site 100 at Hotham also called Mt Higginbotham West 100. Also many of the variable won’t apply to site 100 as they relate to data being collected from Mt Buller as part of a recovery and genetic rescue program being implemented there.
- Instrument
-
- Elliot traps
Method Step 2- Description
-
Data collection
Initially, trapping frequency was monthly trapping, but sample times have subsequently been targeted to the breeding season (Nov-Dec) since about 1987.
Three types of data are collected, athough this package only includes type 1.
1 = trapping data for each tagged (marked) individual capture (i.e. one row of data for each individual captured)
2 = summary trapping data where all individuals captured were tallied. This usually applies to unmarked animals other than MPP’s – there is one row of tallied data for each distinct species (i.e. rats, antechinus)
3 = summary site trapping data – occasionally some sites are trapped differently than normal (i.e. different number of arrangement of traps). This information is captured in each row.
At some sites hair samples (non-intrusive) for genetic analysis have been routinely collected since the early 1990s, but this data is not included in this package.
- Sampling
-
- Study Extent Description
-
These data are from the longest annually monitored Mountain Pygmy Possum site (site 100), there are other data from other sites that is collected opportunistically and with less rigour as this site. As such many of the data categories listed only have one entry relating to site 100 at Hotham also called Mt Higginbotham West 100. Many of the categories won’t apply to site 100 as they relate to data being collected from Mt Buller as part of a recovery and genetic rescue program being implemented there.
- Sampling Description
-
NA
- Associated Parties
-
- Role
- Plot network contact
- Individual
- Dr Richard Williams
- Position
- Senior Research Scientist, CSIRO
- Organization
- ex-CSIRO
- Keywords and Subject Categories
-
- LTERN Monitoring Themes
-
- Mammals
- ANZSRC-FOR
-
- 0501
- 0502
- 0602
- 0608
- GCMD
-
- Earth Science > Biological Classification > Animals/Vertebrates > Mammals
-
- Burramys parvus
- Mountain Pygmy-possum
- Geographic Coverage
-
- Geographic Description
- Mount Hotham, South-east Highlands, Victoriia
- Bounding Coordinates
-
- West
- 146.41728 degrees
- East
- 147.40598 degrees
- North
- -36.73575 degrees
- South
- -37.49639 degrees
- Temporal Coverage
-
- Date Begin
- 1982
- Date End
- 2017
- Taxonomic Coverage and Classification
-
- Classification
-
-
- Species
- Antechinus agilis
-
- Species
- Antechinus swainsonii
-
- Species
- Burramys parvus
-
- Species
- Mastacomys fuscus
-
- Species
- Mus musculus
-
- Species
- Rattus fuscipes
-
- Intellectual Rights, Licence and Usage Conditions
-
CC-BY-4_0 Special conditions None. No special attribution required. Citation details as displayed in the LTERN Data Portal.
- Data Table
-
- Name
- vbps_burramys_population_survey_1982-2017_p823t1212.csv
- Description
- Burramys population survey data since 1982
- Attribute Information
-
site_name
- Name
- site_name
- Definition
- Site name
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- Character
region- Name
- region
- Definition
- Region name
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- Character
date- Name
- date
- Definition
- Survey date
- Measurement Type
- dateTime
- Measurement Domain
-
- Format
- YYYY-MM-DD
day- Name
- day
- Definition
- Day of observation relative to date of survey (observations on the date of the survey have a day of 0)
- Measurement Type
- ratio
- Measurement Domain
-
- Standard Unit
- number
- Number Type
- whole
total_trap_for_night- Name
- total_trap_for_night
- Definition
- Total trapping effort (i.e. number of traps) for the site. Each site is made up of a number of transects (usually 8) which have 20 traps set along each transect. Therefore there are usually 160 traps set each night (160 trapnights) for 4-5 nights which completes a trip or trapping session.
- Measurement Type
- ratio
- Measurement Domain
-
- Standard Unit
- number
- Number Type
- natural
line- Name
- line
- Definition
- Transect line along which the animal was trapped. Sites typically consist of trapping grids where there are a number of transect lines along where traps are set. For example – at site 350 during trapping of 20-24/12/1996 there were 10 transect lines where traps were set as denoted by “1” through to “10” depending on what transect line the animal was caught on.
- Measurement Type
- ordinal
- Measurement Domain
-
- Text Domain
-
- Definition
- Number
point- Name
- point
- Definition
- Point number along transect
- Measurement Type
- ordinal
- Measurement Domain
-
- Text Domain
-
- Definition
- Number
species- Name
- species
- Definition
- Species identifier
- Measurement Type
- nominal
- Measurement Domain
-
- Enumerated Domain
-
- Code Definition
-
- 1
- Mountain Pygmy-possum (Burramys parvus)
- 2
- Bush Rat (Rattus fuscipes)
- 3
- Dusky Antechinus (Antechinus swainsonii)
- 4
- Broad-toothed Rat (Mastocomys fuscus)
- 5
- Agile Antechinus (Antechinus agilis)
- 6
- House Mouse (Mus musculus)
- 12
- Alpine She-oak Skink (Cyclodomorpus praealtus)
- 13
- Southern Water Skink (Eulamprus tympanum)
- 14
- Guthega Skink (Ergernia guthega)
- 15
- White-lipped Snake (Drysdalia coronoides)
- 21
- Southern Thornbill
- 22
- White-browed Scrubwren (Sericornis frontalis)
tag- Name
- tag
- Definition
- Unique ear tag number (mark). Tags are a 4 digit number and letters although they can appear in a excel cell as 1, 2 or 3 digits if the first 1-3 digits were “0’s” (eg. 0017 will appear as 17). Tag numbers go up to 9999 so over time a particular tag number may be re-used; however there is usually at least a 5 year gap between the use of a tag number. Rule: 1. Animals sharing the same tag number but are different species or sexes are obviously different individuals. 2. A three year gap between the appearances of a tag number indicates the re-use of a tag number. >3 years is almost a certainty that the tag number is being re-used. 3. The commencement of the re-use of a tag number should be highlighted by “2” appearing in the “NEW/RE” data field (although this data field will need to be checked to ensure that “1” and “2” are consistently used to mean “new” or “retrap”, respectively.
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- Character
sex- Name
- sex
- Definition
- Sex of animal
- Measurement Type
- nominal
- Measurement Domain
-
- Enumerated Domain
-
- Code Definition
-
- 1
- female
- 2
- male
- -2
- sex undetermined
age- Name
- age
- Definition
- Age of animal Rule: Over time a juvenile can grow to become an adult, but an adult cannot change into a juvenile. If this happens then the data should be highlighted so it can be examined to see whether it is an error or whether there is some ambiguity over the individuals age.
- Measurement Type
- ordinal
- Measurement Domain
-
- Enumerated Domain
-
- Code Definition
-
- 1
- adult
- 2
- juvenile
- 3
- sub-adult or intermediate
- -2
- The age of the animal was not determined or recorded on that day (historically we have no record of how this differs from -9)
- -9
- The age of the animal was not determined or recorded on that day (historically we have no record of how this differs from -2)
pouch_young_number- Name
- pouch_young_number
- Definition
- Number of young in the pouch (can be from 0 through to 10). Rule: 1. This data field is only applicable to marsupials or species 1, 3 & 5 Mountain Pygmy-possums can only have a maximum of 4, Dusky Antechinus a maximum of 8, and a maximum of 10 for the Agile Antechinus
- Measurement Type
- ratio
- Measurement Domain
-
- Standard Unit
- number
- Number Type
- whole
lactating_nipple_number- Name
- lactating_nipple_number
- Definition
- The number of lactating nipples on the animal (can be from 0 through to 10). Rule: 1. This data field is only applicable to marsupials or species 1, 3 & 5 Mountain Pygmy-possums can only have a maximum of 4, Dusky Antechinus a maximum of 8, and a maximum of 10 for the Agile Antechinus -1 means that it is not applicable. So many of the 3736 records are from males. -2 means that the number of lactating nipples (and possibly sex) of the animal was not determined or recorded on that day
- Measurement Type
- ratio
- Measurement Domain
-
- Standard Unit
- number
- Number Type
- natural
weight- Name
- weight
- Definition
- Weight of the animal measured in grams. Rule: 1. Mountain Pygmy-possums do not weigh more than 90. Dusky Antechinus do not weigh more than 130. Agile Antechinus do not weigh more than 35. Rats can weigh up to 250. 2. Weights less than 10 grams are likely to be an error as traps are usually set in a way to not catch such tiny animals. -2 is used when the weight of the animal could not be accurately determined (e.g. in adverse weather)
- Measurement Type
- ratio
- Measurement Domain
-
- Standard Unit
- gram
- Number Type
- integer
is_new_animal_captured- Name
- is_new_animal_captured
- Definition
- Is this the first time this animal is captured
- Measurement Type
- nominal
- Measurement Domain
-
- Enumerated Domain
-
- Code Definition
-
- 0
- retrap (recaptured tagged animal)
- 1
- new (animal caught for the first time)
- -2
- animal escaped before it could be determined if they had an ear tag or not
reproductive_condition- Name
- reproductive_condition
- Definition
- Reproductive condition of animal. The vast majority of records should be -2 or NA, but not all. This is because the data from site 100 is mainly recorded in spring when females have pouch young so the information is picked up in other columns. This variable is not applicable to males or other species/bycatch.
- Measurement Type
- nominal
- Measurement Domain
-
- Enumerated Domain
-
- Code Definition
-
- G
- Advanced pouch young with grey fur
- DLN
- Drying lactating nipples
- LNM
- Lactating nipples with milk
- LNHM
- Lactating nipples with half bulging milk
- LNNM
- Lactating nipples with no milk
- PLSN
- Post lactating with swollen nipples, recent wean with dry mammary glands
- BLY
- Bred last year but not this year yet (?), not pregnant
- CPNP
- Clean pouch, not pregnant
- NP
- Not pregnant, dry pouch
- NR
- Not recorded, escaped before examination
- APLH
- Advanced post lactating with half fat bulging in pouch
- APL
- Advanced post lactating with fat bulging in pouch
- AP
- Advanced post lactating with no fat bulging in pouch, clean pouch
- JCP
- juvenile condition with clean pouch
- LMOP
- Loose moist orange fur in pouch
- LMDOP
- Loose moist, dark skin blotches with orange fur in pouch, pregnant
- LMDOPPP
- Loose moist, dark skin blotches with orange fur in pouch, probably pregnant
- P
- Pregnant
- LMP
- Loose moist pouch
size_of_pouch_young- Name
- size_of_pouch_young
- Definition
- Length (mm) of the pouch young. This data is only recorded for female Burramys parvus captures. Values of -1/-2 mean that the data is not applicable or not recorded.
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- millimeter
- Number Type
- integer
size_of_testes- Name
- size_of_testes
- Definition
- Length (mm) of the testes. This data is only recorded for male Burramys parvus captures. Values of -1/-2 mean that the data is not applicable or not recorded.
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- millimeter
- Number Type
- integer
tail_length- Name
- tail_length
- Definition
- Tail length measured in millimetres. This variable was not measured at this site.
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- millimeter
- Number Type
- integer
body_length- Name
- body_length
- Definition
- Body length measured in millimetres. This variable was not measured at this site.
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- millimeter
- Number Type
- integer
head_length- Name
- head_length
- Definition
- Head length measured in millimetres. This variable was not measured at this site.
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- millimeter
- Number Type
- integer
foot_length- Name
- foot_length
- Definition
- Foot length measured in millimetres. This variable was not measured at this site.
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- millimeter
- Number Type
- integer
ear_length- Name
- ear_length
- Definition
- Ear length measured in millimetres. This variable was not measured at this site.
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- millimeter
- Number Type
- integer
second_run_tag- Name
- second_run_tag
- Definition
- Second run tags This data field denotes whether a tag number has been used multiple times. This scenario has come about because the tags have 4 digits and therefore a full set has a maximum of 9,999 individual numbers. Every 10-15 years a set of tags is exhausted and a new set of tags needs to be started 1 to 9,999.
- Measurement Type
- nominal
- Measurement Domain
-
- Enumerated Domain
-
- Code Definition
-
- Blank cell
- The tag number has not been used multiple times or if it has the number was shared by different species
- 1
- The tag number has been used multiple times and this is the first time it has appeared
- 2
- The tag number has been used multiple times and this is the second time it has appeared
- 3
- The tag number has been used multiple times and this is the third time it has appeared
- -1
- Denotes that the tag number has not been subsequently used
- -2
- Data was not collected.
did_animal_re_tag- Name
- did_animal_re_tag
- Definition
- Has the individual animal been retagged.
- Measurement Type
- nominal
- Measurement Domain
-
- Enumerated Domain
-
- Code Definition
-
- NA
- The individual has not been retagged
- 0
- The individual has not been retagged
- 1
- The individual has been retagged
- -2
- This data was not collected
possible_tags- Name
- possible_tags
- Definition
- Possible original tags This data field applies to individuals that have a ripped ear and have clearly lost their original ear tag. An assumption is made that the individual fitted with a new ear tag is maintaining a home range therefore I have searched the trapping records for individuals that were previously trapped in that area. From that I have calculated a list of potential candidates. Where value is -1, this is not applicable.
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- Character
preferred_tag- Name
- preferred_tag
- Definition
- From the “possible original tags” this represents the tag that was chosen as the preferred option, based on the trapping history, providing the best match for the individual that has been retagged. Where value is -1, this is not applicable.
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- Character
scientific_name- Name
- scientific_name
- Definition
- Scientific name
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- Character
common_name- Name
- common_name
- Definition
- Common name
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- Character
- Number Of Records
- 4667
- Physical Structure Description
-
- Object Name
- vbps_burramys_population_survey_1982-2017_p823t1212.csv
- Size
- 780270 byte
- Text Format
-
- Number of Header Lines
- 1
- Record Delimiter
- #x0A
- Attribute Orientation
- column
- Simple Delimited
-
- Field Delimiter
- ,
- Distribution
-
Online
- URL
- ltern.375.1
- Access
-
- Access Control
-
- Auth System
- knb
- Order
- allowFirst
- Allow:
-
Permission Principal [all] cn=submitters,o=unaffiliated,dc=ecoinformatics,dc=org [read] cn=pn_vic_alpine,o=unaffiliated,dc=ecoinformatics,dc=org [read] cn=allusers,o=unaffiliated,dc=ecoinformatics,dc=org
- Access
-
- Access Control
-
- Auth System
- knb
- Order
- allowFirst
- Allow:
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Permission Principal [read] public [all] cn=submitters,o=unaffiliated,dc=ecoinformatics,dc=org [read] cn=pn_vic_alpine,o=unaffiliated,dc=ecoinformatics,dc=org
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